X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6FCH 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5293NaOAc, PEG4000, Glycerol, Tris
Crystal Properties
Matthews coefficientSolvent content
2.1943.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.06α = 90.08
b = 49.8β = 93.22
c = 71.81γ = 102.31
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152014-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.966ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.971.69900.0730.0920.0548.62.44703147031
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.92840.1564.42.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6FCH1.971.6944643238890.030.17730.17540.2137RANDOM22.045
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.71-0.24-0.41-0.98-0.1-1.46
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.304
r_dihedral_angle_4_deg19.74
r_dihedral_angle_3_deg12.412
r_dihedral_angle_1_deg5.184
r_mcangle_it1.929
r_mcbond_it1.343
r_mcbond_other1.331
r_angle_refined_deg1.142
r_angle_other_deg0.578
r_chiral_restr0.055
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.304
r_dihedral_angle_4_deg19.74
r_dihedral_angle_3_deg12.412
r_dihedral_angle_1_deg5.184
r_mcangle_it1.929
r_mcbond_it1.343
r_mcbond_other1.331
r_angle_refined_deg1.142
r_angle_other_deg0.578
r_chiral_restr0.055
r_bond_refined_d0.005
r_bond_other_d0.005
r_gen_planes_refined0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5448
Nucleic Acid Atoms
Solvent Atoms345
Heterogen Atoms138

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
Cootmodel building
MxCuBEdata collection
iMOSFLMdata reduction