6HNU

Crystal structure of the aminotransferase Aro8 from C. Albicans with ligands


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6HNB 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M MgCl2, 0.1 M Bis-Tris pH 5.5, 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.3848.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.785α = 90
b = 102.09β = 90
c = 146.883γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2017-01-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.8943BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85099.60.0970.99711.294.197014
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9198.60.6871.94.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6HNB1.845.3392163485199.630.175870.173620.21871RANDOM24.339
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.320.28-0.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.244
r_dihedral_angle_4_deg15.765
r_dihedral_angle_3_deg14.199
r_dihedral_angle_1_deg6.989
r_long_range_B_refined5.748
r_long_range_B_other5.567
r_scangle_other3.861
r_mcangle_other2.874
r_mcangle_it2.868
r_scbond_it2.543
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.244
r_dihedral_angle_4_deg15.765
r_dihedral_angle_3_deg14.199
r_dihedral_angle_1_deg6.989
r_long_range_B_refined5.748
r_long_range_B_other5.567
r_scangle_other3.861
r_mcangle_other2.874
r_mcangle_it2.868
r_scbond_it2.543
r_scbond_other2.543
r_angle_other_deg2.281
r_mcbond_it2.012
r_mcbond_other2
r_angle_refined_deg1.586
r_chiral_restr0.085
r_bond_other_d0.035
r_gen_planes_other0.014
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7577
Nucleic Acid Atoms
Solvent Atoms1126
Heterogen Atoms94

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing