X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3UQA 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52910.1 M Tris (pH 8.5), 3.0 M NaCl
Crystal Properties
Matthews coefficientSolvent content
2.4249.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.04α = 90
b = 48.19β = 90
c = 59.5γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray103CCDMARMOSAIC 225 mm CCD2016-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONRRCAT INDUS-2 BEAMLINE PX-BL210.9794RRCAT INDUS-2PX-BL21

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1328.2599.30.0640.0690.0250.99815.47.2466116.355
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.131.1598.50.290.3130.1180.95756.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3UQA1.1328.2544215233699.160.12590.12490.14543RANDOM12.691
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.250.01-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.709
r_sphericity_free22.8
r_dihedral_angle_4_deg18.568
r_dihedral_angle_3_deg11.391
r_sphericity_bonded8.344
r_rigid_bond_restr7.719
r_dihedral_angle_1_deg7.517
r_long_range_B_refined3.477
r_long_range_B_other3.41
r_mcangle_it3.093
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.709
r_sphericity_free22.8
r_dihedral_angle_4_deg18.568
r_dihedral_angle_3_deg11.391
r_sphericity_bonded8.344
r_rigid_bond_restr7.719
r_dihedral_angle_1_deg7.517
r_long_range_B_refined3.477
r_long_range_B_other3.41
r_mcangle_it3.093
r_mcangle_other3.091
r_scangle_other2.81
r_mcbond_other2.751
r_mcbond_it2.749
r_scbond_it2.334
r_scbond_other2.332
r_angle_refined_deg2.088
r_angle_other_deg1.219
r_chiral_restr0.129
r_bond_refined_d0.02
r_gen_planes_refined0.013
r_gen_planes_other0.006
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms831
Nucleic Acid Atoms
Solvent Atoms92
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing