X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291PEG 3350 12 w/v, 0.1M sodium HEPES, 6mM cadmium chloride, 6mM magnesium chloride
Crystal Properties
Matthews coefficientSolvent content
2.0239.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.775α = 90
b = 43.046β = 91.73
c = 48.416γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 X 200K-AVariMax Cu-HF2019-01-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8523.8499.840.052410.052410.01289148.2115989518.32
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.91699.070.11630.12090.032510.99725.5913.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8523.86890298199.760.186810.183360.2191RANDOM20.974
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.79-0.321.35-0.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.096
r_dihedral_angle_4_deg25.426
r_dihedral_angle_3_deg12.805
r_dihedral_angle_1_deg5.436
r_long_range_B_refined4.771
r_long_range_B_other4.55
r_scangle_other2.657
r_mcangle_other1.841
r_mcangle_it1.84
r_scbond_it1.586
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.096
r_dihedral_angle_4_deg25.426
r_dihedral_angle_3_deg12.805
r_dihedral_angle_1_deg5.436
r_long_range_B_refined4.771
r_long_range_B_other4.55
r_scangle_other2.657
r_mcangle_other1.841
r_mcangle_it1.84
r_scbond_it1.586
r_scbond_other1.585
r_angle_other_deg1.285
r_angle_refined_deg1.232
r_mcbond_it1.129
r_mcbond_other1.123
r_chiral_restr0.061
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms938
Nucleic Acid Atoms
Solvent Atoms124
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing