6SX4 | pdb_00006sx4

Structure of C. glutamicum mycoloyltransferase A

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	25% PEG3350, 0.2M Ammonium Acetate, 0.05M Bis-Tris buffer, pH 5.5

Crystal Properties
Matthews coefficient	Solvent content
2.49	50.57

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.15	α = 90
b = 170.48	β = 90
c = 241.85	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2011-06-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 1	0.979	SOLEIL	PROXIMA 1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.796	48.6	99.7	0.277	0.989	5.12	4.29		128339

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.796	2.96			1.69	0.62

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.796	48.572	67565	3444	99.711	0.243	0.2419	0.2445	0.2624	0.2658	51.744

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
8.713			-4.358		-4.355

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.825
r_dihedral_angle_4_deg	21.671
r_dihedral_angle_3_deg	17.85
r_lrange_it	7.296
r_lrange_other	7.296
r_dihedral_angle_1_deg	6.65
r_mcangle_it	4.624
r_mcangle_other	4.624
r_scangle_it	4.442
r_scangle_other	4.442
r_mcbond_it	2.822
r_mcbond_other	2.82
r_scbond_it	2.618
r_scbond_other	2.618
r_angle_other_deg	2.388
r_angle_refined_deg	1.409
r_symmetry_nbd_other	0.235
r_nbd_other	0.229
r_nbd_refined	0.204
r_xyhbond_nbd_refined	0.184
r_symmetry_xyhbond_nbd_refined	0.177
r_symmetry_xyhbond_nbd_other	0.174
r_nbtor_refined	0.168
r_symmetry_nbd_refined	0.115
r_symmetry_nbtor_other	0.069
r_chiral_restr	0.055
r_bond_other_d	0.036
r_gen_planes_other	0.007
r_bond_refined_d	0.006
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	18056
Nucleic Acid Atoms
Solvent Atoms	209
Heterogen Atoms	100

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing