6U1X

Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor (3.0 A resolution)


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5A22 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d8.6247
f_angle_d0.5674
f_chiral_restr0.0393
f_plane_restr0.0033
f_bond_d0.0032
Sample
VSV L:P
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles83979
Reported Resolution (Å)3
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsRefinement and classification were limited to a resolution of 0.4 nm to produce unbiased resolution estimate at final estimate resolution.
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (5A22)
Refinement SpaceREAL
Refinement ProtocolOTHER
Refinement TargetCC + restraints
Overall B Value70.6
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)100
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
CTF CORRECTIONCTFFIND4
MODEL FITTINGO14.0.0
INITIAL EULER ASSIGNMENTFREALIGNX
FINAL EULER ASSIGNMENTFREALIGNX
CLASSIFICATIONFREALIGNX
RECONSTRUCTIONFREALIGNX
MODEL REFINEMENTPHENIX1.16-3549
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTIONCTF correction using cisTEM246825Resolution limit for picking: 2 nm