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NMR solution structure of the Iron-Sulfur protein PioC from Rhodopseudomonas palustris TIE-1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 2 3D HNCO 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 3 3D HNCA 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 4 3D CBCANH 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 5 3D CBCA(CO)NH 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 6 3D HNCACO 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 7 3D HBHA(CO)NH 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 8 3D HNHA 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 12 2D 1H-13C HSQC 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 11 2D 1H-1H TOCSY 500 uM PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 600 10 2D 1H-1H NOESY 500 uM PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 9 3D HCCH-TOCSY 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 16 3D 1H-15N NOESY 150 uM [U-99% 15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE III 900 15 3D 1H-13C NOESY aliphatic 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE 950 14 2D relaxation experiments 150 uM [U-99% 15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE 500 13 2D CON 500 uM [U-13C; U-15N] PioC 90% H2O/10% D2O 300 mM 5.6 1 atm 298 Bruker AVANCE 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 900 3 Bruker AVANCE 500 4 Bruker AVANCE 950 5 Bruker AVANCE 700
NMR Refinement Method Details Software torsion angle dynamics CYANA molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 2000 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA Keller and Wuthrich 2 structure calculation CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 collection TopSpin 3.16 Bruker Biospin 4 processing TopSpin 3.16 Bruker Biospin 5 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman