Experiment: 6G9S

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5E31	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	5DVY	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	1VQQ	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	3OCL	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	4OOL	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	4WEK	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	4WEJ	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	4MNR	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw
experimental model	PDB	1XKW	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.5	293	0.1 M TrisBase / Bicine pH 8,5 ; 0.1 M Carboxylic acids mix (0.02 M Sodium formate ; 0.02 M Ammonium acetate ; 0.02 M Sodium citrate tribasic dihydrate ; 0.02 M Sodium potassium tartrate tetrahydrate ; 0.02 M Sodium oxamate) ; 24 % Glycerol ; 12 % PEG 4000

Crystal Properties
Matthews coefficient	Solvent content
3.6	65.8

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 126.303	α = 90
b = 182.806	β = 90
c = 75.561	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2016-11-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.0	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	45.7	92.84	0.1985	0.05733	0.995	8.32	11.3		59191

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.07	80.6		3.254	3.424	1.054	0.57		10.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	ensemble of models was used: 5e31, 5dvy, 1vqq, 3ocl, 4ool, 4wek, 4wej, 4mnr, 1xkw	2.001	44.405	55067	1860	92.84	0.2173	0.2159	0.2596

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	4.134
f_angle_d	0.944
f_chiral_restr	0.052
f_bond_d	0.008
f_plane_restr	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4275
Nucleic Acid Atoms
Solvent Atoms	364
Heterogen Atoms

Software

Software
Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MoRDa	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.