7AV5

Structure of EstD11 in complex with Fluorescein

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7AT0

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	291	3.2M Sodium formate and 0.1M citrate pH 5

Crystal Properties
Matthews coefficient	Solvent content
2.2	44.15

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 48.278	α = 90
b = 80.562	β = 90
c = 145.788	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-07-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.979	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.97	45.872	100	0.112	0.045	0.998	15.5	6.9		41145

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.97	2.02	100		0.82	0.329	0.789	2.6	7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7AT0	1.97	45.872	41079	2099	99.964	0.172	0.1696	0.2144	22.754

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.002			-0.006		0.008

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.451
r_dihedral_angle_4_deg	18.967
r_dihedral_angle_3_deg	14.198
r_lrange_it	6.671
r_lrange_other	6.481
r_dihedral_angle_1_deg	5.8
r_scangle_it	4.805
r_scangle_other	4.804
r_scbond_it	3.149
r_scbond_other	3.146
r_mcangle_it	2.873
r_mcangle_other	2.873
r_mcbond_it	1.917
r_mcbond_other	1.917
r_angle_refined_deg	1.545
r_angle_other_deg	1.362
r_symmetry_nbd_refined	0.289
r_symmetry_xyhbond_nbd_refined	0.266
r_nbd_refined	0.217
r_nbd_other	0.207
r_symmetry_nbd_other	0.191
r_xyhbond_nbd_refined	0.184
r_nbtor_refined	0.16
r_symmetry_xyhbond_nbd_other	0.131
r_ncsr_local_group_1	0.098
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.075
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4461
Nucleic Acid Atoms
Solvent Atoms	416
Heterogen Atoms	113

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing