7AWF

The Fk1 domain of FKBP51 in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7AOU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529328% PEG3350 0.1M HEPES pH 7.5 0.2M ammonium thiocyanate NH4 SCN
Crystal Properties
Matthews coefficientSolvent content
2.2344.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.46α = 90
b = 50.066β = 90
c = 58.781γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-10-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.438.1198.20.1220.160.1010.9884.84.224784
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.421.3321.7281.090.4944

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7AOU1.438.00324745124297.7290.1970.19410.2434RANDOM21.766
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.579-0.419-1.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.508
r_dihedral_angle_4_deg18.134
r_dihedral_angle_3_deg12.716
r_dihedral_angle_1_deg8.872
r_lrange_it5.391
r_lrange_other5.249
r_scangle_it4.873
r_scangle_other4.87
r_mcangle_it4.385
r_mcangle_other4.383
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.508
r_dihedral_angle_4_deg18.134
r_dihedral_angle_3_deg12.716
r_dihedral_angle_1_deg8.872
r_lrange_it5.391
r_lrange_other5.249
r_scangle_it4.873
r_scangle_other4.87
r_mcangle_it4.385
r_mcangle_other4.383
r_scbond_it4.021
r_scbond_other4.017
r_mcbond_it3.745
r_mcbond_other3.743
r_rigid_bond_restr3.256
r_angle_refined_deg1.946
r_angle_other_deg1.683
r_chiral_restr_other1.121
r_nbd_refined0.204
r_symmetry_nbd_other0.183
r_nbd_other0.173
r_nbtor_refined0.172
r_symmetry_xyhbond_nbd_refined0.163
r_xyhbond_nbd_refined0.131
r_symmetry_nbd_refined0.103
r_chiral_restr0.099
r_symmetry_nbtor_other0.086
r_bond_refined_d0.017
r_gen_planes_refined0.015
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms936
Nucleic Acid Atoms
Solvent Atoms111
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing