X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1E8C 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52980.1M citrate pH 5.5 14% PEG4K 20% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2946.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.631α = 97.32
b = 58.944β = 91.54
c = 74.228γ = 105.17
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-04-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7556.496.60.9978.41.992515
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.893.50.4951.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1e8c1.7556.3488075444096.490.196450.195250.21971RANDOM38.196
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.980.96-0.170.930.6-0.75
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.743
r_dihedral_angle_4_deg13.032
r_dihedral_angle_3_deg12.508
r_long_range_B_refined6.546
r_long_range_B_other6.516
r_dihedral_angle_1_deg5.351
r_scangle_other4.542
r_scbond_it3.099
r_scbond_other3.099
r_mcangle_other2.936
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.743
r_dihedral_angle_4_deg13.032
r_dihedral_angle_3_deg12.508
r_long_range_B_refined6.546
r_long_range_B_other6.516
r_dihedral_angle_1_deg5.351
r_scangle_other4.542
r_scbond_it3.099
r_scbond_other3.099
r_mcangle_other2.936
r_mcangle_it2.935
r_mcbond_it2.119
r_mcbond_other2.117
r_angle_refined_deg1.157
r_angle_other_deg1.043
r_chiral_restr0.067
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7284
Nucleic Acid Atoms
Solvent Atoms424
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing