7OH4
Cryo-EM structure of Drs2p-Cdc50p in the E1 state with PI4P and Mg2+ bound
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| f_dihedral_angle_d | 16.7318 |
| f_angle_d | 0.4255 |
| f_chiral_restr | 0.0396 |
| f_plane_restr | 0.0033 |
| f_bond_d | 0.0018 |
| Sample |
|---|
| Binary complex of Drs2p-Cdc50p with the regulatory lipid PI4P |
| Sample Components |
| Drs2p |
| Cdc50p |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 167226 |
| Reported Resolution (Å) | 3 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (6ROJ) | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | |||||
| Refinement Target | correlation coefficient | ||||
| Overall B Value | 55 | ||||
| Fitting Procedure | |||||
| Details | Domains were rigid body fit into the density and manually adjusted and reconnected. | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K3 (6k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 60 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | cryoSPARC | 2 |
| IMAGE ACQUISITION | EPU | |
| CTF CORRECTION | cryoSPARC | 2 |
| MODEL FITTING | Coot | 0.9-pre EL (ccpem) |
| INITIAL EULER ASSIGNMENT | cryoSPARC | 2 |
| FINAL EULER ASSIGNMENT | cryoSPARC | 2 |
| CLASSIFICATION | cryoSPARC | 2 |
| RECONSTRUCTION | cryoSPARC | 2 |
| MODEL REFINEMENT | PHENIX | 1.18rc7-3834 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| NONE | 780933 | |||
