X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 193L 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2934-8% (M/V) NACL IN 0.1 M ACETATE BUFFER PH 4.5. PROTEIN STOCK CONCENTRATION OF 50 MG/ML.
Crystal Properties
Matthews coefficientSolvent content
1.9938.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.68α = 90
b = 77.68β = 90
c = 37.757γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-05-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID291.00ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1238.8499.6121.39.944798
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.121.140.7452.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT193L1.1238.8442467227299.540.148770.147360.17557RANDOM18.295
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.17-1.172.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.639
r_dihedral_angle_4_deg19.662
r_dihedral_angle_3_deg11.72
r_dihedral_angle_1_deg6.059
r_long_range_B_refined4.13
r_rigid_bond_restr3.47
r_long_range_B_other3.455
r_scangle_other2.245
r_scbond_it1.844
r_scbond_other1.842
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.639
r_dihedral_angle_4_deg19.662
r_dihedral_angle_3_deg11.72
r_dihedral_angle_1_deg6.059
r_long_range_B_refined4.13
r_rigid_bond_restr3.47
r_long_range_B_other3.455
r_scangle_other2.245
r_scbond_it1.844
r_scbond_other1.842
r_mcangle_it1.634
r_mcangle_other1.633
r_angle_refined_deg1.549
r_angle_other_deg1.306
r_mcbond_other1.214
r_mcbond_it1.213
r_chiral_restr0.109
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms156
Heterogen Atoms42

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing