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Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 1B and 2B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MSG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 277 200 mM di-ammonium phosphate, and 100 mM sodium acetate at pH 4.4
Crystal Properties Matthews coefficient Solvent content 5.33 76.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 200.819 α = 90 b = 200.819 β = 90 c = 257.018 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2017-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 76.972 73.1 0.128 0.149 0.994 8 3.9 77848
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.12 3.32 1.3 1.49 0.536 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5MSG 3.123 76.972 77848 3951 73.077 0.241 0.2396 0.2404 0.2723 0.2719 108.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.025 -0.012 -0.025 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.68 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_4_deg 10.196 r_lrange_it 6.332 r_lrange_other 6.332 r_dihedral_angle_other_2_deg 6.123 r_dihedral_angle_1_deg 4.795 r_mcangle_it 3.785 r_mcangle_other 3.785 r_scangle_it 3.208
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.68 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_4_deg 10.196 r_lrange_it 6.332 r_lrange_other 6.332 r_dihedral_angle_other_2_deg 6.123 r_dihedral_angle_1_deg 4.795 r_mcangle_it 3.785 r_mcangle_other 3.785 r_scangle_it 3.208 r_scangle_other 3.208 r_mcbond_it 2.165 r_mcbond_other 2.165 r_scbond_it 1.728 r_scbond_other 1.728 r_angle_refined_deg 1.171 r_angle_other_deg 0.993 r_ext_dist_refined_d 0.231 r_nbd_refined 0.159 r_nbtor_refined 0.151 r_symmetry_nbd_other 0.146 r_symmetry_xyhbond_nbd_refined 0.143 r_xyhbond_nbd_refined 0.126 r_nbd_other 0.122 r_symmetry_nbtor_other 0.072 r_symmetry_nbd_refined 0.057 r_chiral_restr 0.048 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17684 Nucleic Acid Atoms 745 Solvent Atoms 1 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing