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Influenza A/H7N9 polymerase core dimer with Pol II pSer5 CTD peptide mimic bound in site 2A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.1 M Tris pH 7.0, 13 % PEG 8K, 0.2 M MgCl2, 0.1 M guanidine hydrochloride
Crystal Properties Matthews coefficient Solvent content 2.71 54.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.474 α = 90 b = 144.131 β = 90 c = 336.197 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97625 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.41 49.211 73.3 0.283 0.306 0.995 7.7 14.1 37875
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.41 3.57 1.873 1.946 0.696 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6TU5 3.412 49.211 37875 1852 73.225 0.223 0.2201 0.221 0.2728 0.2691 86.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.404 1.569 -1.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_3_deg 16.81 r_dihedral_angle_4_deg 14.756 r_lrange_it 7.81 r_lrange_other 7.81 r_dihedral_angle_1_deg 5.498 r_mcangle_it 4.88 r_mcangle_other 4.88 r_scangle_it 4.123 r_scangle_other 4.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_3_deg 16.81 r_dihedral_angle_4_deg 14.756 r_lrange_it 7.81 r_lrange_other 7.81 r_dihedral_angle_1_deg 5.498 r_mcangle_it 4.88 r_mcangle_other 4.88 r_scangle_it 4.123 r_scangle_other 4.123 r_mcbond_it 2.811 r_mcbond_other 2.81 r_scbond_it 2.273 r_scbond_other 2.273 r_angle_refined_deg 1.207 r_angle_other_deg 1.041 r_ext_dist_refined_d 0.201 r_nbd_refined 0.182 r_symmetry_nbd_other 0.164 r_xyhbond_nbd_refined 0.161 r_nbtor_refined 0.156 r_nbd_other 0.155 r_symmetry_nbtor_other 0.074 r_ncsr_local_group_1 0.065 r_ncsr_local_group_3 0.05 r_chiral_restr 0.047 r_ncsr_local_group_2 0.046 r_symmetry_nbd_refined 0.037 r_ncsr_local_group_4 0.007 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19381 Nucleic Acid Atoms 524 Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing