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Small molecule stabilizer (1075481) for ERalpha and 14-3-3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.1), 26% (v/v) PEG400, 0.19 CaCl2, 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.66 53.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.113 α = 90 b = 112.517 β = 90 c = 62.496 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033200 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 45.53 99.79 1 34.1 13.4 56961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.452 0.99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.4 45.53 54061 2900 99.77 0.12921 0.12781 0.1277 0.15548 0.1561 RANDOM 13.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.34 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.444 r_dihedral_angle_4_deg 17.209 r_dihedral_angle_3_deg 10.917 r_dihedral_angle_1_deg 4.509 r_long_range_B_refined 3.651 r_long_range_B_other 3.055 r_rigid_bond_restr 2.492 r_scangle_other 2.384 r_scbond_it 1.878 r_scbond_other 1.877
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.444 r_dihedral_angle_4_deg 17.209 r_dihedral_angle_3_deg 10.917 r_dihedral_angle_1_deg 4.509 r_long_range_B_refined 3.651 r_long_range_B_other 3.055 r_rigid_bond_restr 2.492 r_scangle_other 2.384 r_scbond_it 1.878 r_scbond_other 1.877 r_angle_refined_deg 1.692 r_mcangle_it 1.592 r_mcangle_other 1.592 r_angle_other_deg 1.322 r_mcbond_it 1.156 r_mcbond_other 1.155 r_chiral_restr 0.112 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction DIALS data scaling REFMAC phasing