8BPU

X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(D-p-FPhF)(O2CCH3)3] (Structure 2)

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	193L
experimental model	PDB	198L

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	2.0 M sodium formate, 0.1 M Hepes buffer pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.01	38.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 78.36	α = 90
b = 78.36	β = 90
c = 37.51	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-06-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.81	55.41	99.5	0.191	0.993	11.2	20		11121

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.81	1.84			1.328	0.874	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	198L	1.81	55.409	11020	532	99.038	0.232	0.2291	0.2894	32.33

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.481			-0.481		0.963

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.072
r_dihedral_angle_4_deg	23.048
r_dihedral_angle_3_deg	16.403
r_dihedral_angle_1_deg	7.524
r_lrange_it	6.487
r_lrange_other	6.44
r_scangle_other	4.564
r_scangle_it	4.474
r_mcangle_it	3.343
r_mcangle_other	3.341
r_scbond_it	3.004
r_scbond_other	2.984
r_mcbond_it	2.397
r_mcbond_other	2.396
r_angle_refined_deg	1.557
r_angle_other_deg	1.347
r_symmetry_xyhbond_nbd_refined	0.289
r_symmetry_nbd_refined	0.275
r_nbd_refined	0.223
r_xyhbond_nbd_refined	0.215
r_symmetry_nbd_other	0.201
r_nbd_other	0.195
r_nbtor_refined	0.177
r_metal_ion_refined	0.173
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.076
r_bond_refined_d	0.008
r_ext_dist_refined_d	0.008
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	73
Heterogen Atoms	55

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing