8CCB

The Fk1 domain of FKBP51 in complex with 2-(3-((1R)-1-(((2S)-1-(2-(5-chlorothiophen-2-yl)-2-cyclohexylacetyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29316% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.7855.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.328α = 90
b = 54.115β = 90
c = 57.158γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-09-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.739.399.80.0530.0630.0340.99915.96.217720
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.730.5670.6730.3580.8846.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW71.730.9931767179199.6170.210.20920.235824.522
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.4264.35-1.924
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.501
r_dihedral_angle_3_deg11.347
r_dihedral_angle_1_deg8.351
r_lrange_it7.57
r_lrange_other7.504
r_dihedral_angle_2_deg3.774
r_scangle_it2.589
r_scangle_other2.588
r_mcangle_it2.562
r_mcangle_other2.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.501
r_dihedral_angle_3_deg11.347
r_dihedral_angle_1_deg8.351
r_lrange_it7.57
r_lrange_other7.504
r_dihedral_angle_2_deg3.774
r_scangle_it2.589
r_scangle_other2.588
r_mcangle_it2.562
r_mcangle_other2.56
r_angle_refined_deg1.781
r_chiral_restr_other1.688
r_scbond_it1.595
r_scbond_other1.594
r_mcbond_other1.557
r_mcbond_it1.556
r_angle_other_deg1.053
r_symmetry_nbd_refined0.339
r_nbd_refined0.226
r_symmetry_nbd_other0.194
r_nbtor_refined0.182
r_xyhbond_nbd_refined0.157
r_symmetry_xyhbond_nbd_refined0.119
r_nbd_other0.111
r_symmetry_nbtor_other0.082
r_chiral_restr0.072
r_bond_refined_d0.011
r_gen_planes_refined0.011
r_bond_other_d0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms925
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing