☰ Navigation Tabs
Crystal structure of T151G CAO1 in complex with piceatannol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7T8Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277.15 0.1 M HEPES-NaOH, pH 7,
42% sodium polyacrylate 2100,
10 mM piceatannol
Crystal Properties Matthews coefficient Solvent content 2.8 56.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.305 α = 90 b = 101.305 β = 90 c = 449.871 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.9 0.117 0.999 17.53 9.6 210597
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.02 1.634 0.444 1.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 49.99 201407 9190 99.9 0.17219 0.17121 0.1821 0.19335 0.2033 RANDOM 30.799
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.22 0.44 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 15.281 r_dihedral_angle_3_deg 13.201 r_dihedral_angle_1_deg 7.455 r_long_range_B_refined 5.616 r_long_range_B_other 5.602 r_scangle_other 3.775 r_mcangle_other 2.688 r_mcangle_it 2.687 r_scbond_it 2.406 r_scbond_other 2.406
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 15.281 r_dihedral_angle_3_deg 13.201 r_dihedral_angle_1_deg 7.455 r_long_range_B_refined 5.616 r_long_range_B_other 5.602 r_scangle_other 3.775 r_mcangle_other 2.688 r_mcangle_it 2.687 r_scbond_it 2.406 r_scbond_other 2.406 r_dihedral_angle_2_deg 1.885 r_mcbond_it 1.863 r_mcbond_other 1.861 r_angle_refined_deg 1.104 r_angle_other_deg 0.389 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15930 Nucleic Acid Atoms Solvent Atoms 2023 Heterogen Atoms 202
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing