☰ Navigation Tabs
High resolution structure of Dehydroascorbate Reductase from Cenchrus Americanus in complex with Acetate in the G-site and Glycerol in the H-site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EVO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 100mM SODIUM ACETATE TRIHYDRATE pH 4.6, 2M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.389 α = 90 b = 70.389 β = 90 c = 111.69 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2020-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8731 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.85 99.8 0.997 13.4 6.7 26638
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.801 1.833 99.1 0.808 2 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.81 19.24 24837 1223 99.73 0.18489 0.18319 0.1938 0.21888 0.2202 RANDOM 38.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.221 r_long_range_B_refined 7.243 r_long_range_B_other 7.106 r_dihedral_angle_1_deg 5.695 r_scangle_other 5.243 r_scbond_other 3.677 r_scbond_it 3.673 r_mcangle_other 3.329 r_mcangle_it 3.326 r_mcbond_it 2.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.221 r_long_range_B_refined 7.243 r_long_range_B_other 7.106 r_dihedral_angle_1_deg 5.695 r_scangle_other 5.243 r_scbond_other 3.677 r_scbond_it 3.673 r_mcangle_other 3.329 r_mcangle_it 3.326 r_mcbond_it 2.574 r_mcbond_other 2.556 r_angle_refined_deg 1.39 r_angle_other_deg 0.514 r_chiral_restr 0.067 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1641 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 10
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction autoPROC data scaling PHENIX phasing