X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62910.1 M SPG Buffer, 25% PEG 1500
Crystal Properties
Matthews coefficientSolvent content
2.2244.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.946α = 90
b = 93.648β = 98.45
c = 94.84γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-12-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91188DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1293.8199.40.1020.1190.0620.9925.93.63915228
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0594.80.5510.6580.3530.8311.43.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT293.8136587183498.190.219940.218090.25641RANDOM39.047
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.351.65-1.961.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.69
r_dihedral_angle_4_deg15.849
r_dihedral_angle_3_deg15.283
r_dihedral_angle_1_deg9.267
r_long_range_B_refined5.218
r_long_range_B_other5.174
r_scangle_other2.242
r_mcangle_it2.189
r_mcangle_other2.189
r_angle_refined_deg1.489
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.69
r_dihedral_angle_4_deg15.849
r_dihedral_angle_3_deg15.283
r_dihedral_angle_1_deg9.267
r_long_range_B_refined5.218
r_long_range_B_other5.174
r_scangle_other2.242
r_mcangle_it2.189
r_mcangle_other2.189
r_angle_refined_deg1.489
r_scbond_it1.412
r_scbond_other1.411
r_mcbond_it1.36
r_mcbond_other1.358
r_angle_other_deg1.241
r_chiral_restr0.069
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4640
Nucleic Acid Atoms
Solvent Atoms317
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata scaling
xia2data reduction
PHASERphasing