Navigation Tabs SSX structure of Lysozyme grown in batch conditions
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 3 294 Protein dissolved in 20 mM sodium acetate pH 4.6
Protein and precipitant mixed in a 1:4 ratio
Precipitant solution: 6% PEG 6000 (w/v), 3.4M NaCl and 1M sodium acetate pH 3.0
Crystal Properties Matthews coefficient Solvent content 2.06 40.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79 α = 90 b = 79 β = 90 c = 37.9 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL PSI JUNGFRAU 4M 2023-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07 ESRF ID29
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 SOS Chip fixed target
Data Reduction Diffraction ID Frames Indexed Crystal Hits Frames Indexed Latices Merged 1 29954 34032 29954
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 79 100 0.99 13.5 438 11636 30.46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.49 0.2 47.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work R-Free Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.8 55.924 11597 581 99.991 0.173 0.1706 0.2307 38.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.004 -0.004 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.297 r_dihedral_angle_3_deg 12.871 r_dihedral_angle_2_deg 8.961 r_lrange_it 8.004 r_lrange_other 7.97 r_dihedral_angle_1_deg 6.997 r_scangle_it 6.642 r_scangle_other 6.638 r_scbond_it 4.325 r_scbond_other 4.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.297 r_dihedral_angle_3_deg 12.871 r_dihedral_angle_2_deg 8.961 r_lrange_it 8.004 r_lrange_other 7.97 r_dihedral_angle_1_deg 6.997 r_scangle_it 6.642 r_scangle_other 6.638 r_scbond_it 4.325 r_scbond_other 4.321 r_mcangle_other 3.453 r_mcangle_it 3.43 r_mcbond_other 2.721 r_mcbond_it 2.719 r_angle_refined_deg 1.551 r_angle_other_deg 0.562 r_nbd_refined 0.222 r_symmetry_nbd_other 0.202 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.175 r_nbd_other 0.118 r_symmetry_xyhbond_nbd_refined 0.105 r_symmetry_nbd_refined 0.091 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling MOLREP phasing
