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ESTS1 phthalate ester degrading esterase from Sulfobacillus acidophilus S154A mutant in complex with diethylhexyl phthalate at 2.4A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293.15 Lithium sulphate, 0.1M Tris, Ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.24 45.342
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.499 α = 90 b = 107.499 β = 90 c = 44.919 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2024-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 23.073 100 0.145 0.997 12.8 15.2 11809
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 0.337 0.957
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.4 23.073 11791 589 99.772 0.176 0.1728 0.1736 0.2464 0.2475 23.408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.717 0.359 0.717 -2.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.312 r_dihedral_angle_6_deg 13.815 r_lrange_it 7.337 r_dihedral_angle_2_deg 6.976 r_dihedral_angle_1_deg 6.362 r_scangle_it 3.908 r_scbond_it 2.53 r_mcangle_it 2.484 r_mcbond_it 1.538 r_angle_refined_deg 1.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.312 r_dihedral_angle_6_deg 13.815 r_lrange_it 7.337 r_dihedral_angle_2_deg 6.976 r_dihedral_angle_1_deg 6.362 r_scangle_it 3.908 r_scbond_it 2.53 r_mcangle_it 2.484 r_mcbond_it 1.538 r_angle_refined_deg 1.456 r_nbtor_refined 0.312 r_symmetry_nbd_refined 0.247 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.111 r_chiral_restr 0.108 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2294 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling MOLREP phasing