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compound 3a bound KMT9 crystal structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H1D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.2 M Na3Citrate, 0.1M Tris 7.5
Crystal Properties Matthews coefficient Solvent content 3.16 61.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.249 α = 90 b = 110.249 β = 90 c = 130.029 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2019-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 47.74 99.9 0.139 1 20.6 39 93205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.42 0.389
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.392 47.74 93127 4718 99.933 0.148 0.1469 0.1541 0.1734 0.178 22.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.386 -0.193 -0.386 1.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.745 r_rigid_bond_restr 16.674 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_2_deg 11.599 r_scbond_it 9.888 r_scbond_other 9.885 r_scangle_it 8.676 r_scangle_other 8.673 r_lrange_it 7.429 r_lrange_other 7.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.745 r_rigid_bond_restr 16.674 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_2_deg 11.599 r_scbond_it 9.888 r_scbond_other 9.885 r_scangle_it 8.676 r_scangle_other 8.673 r_lrange_it 7.429 r_lrange_other 7.387 r_dihedral_angle_1_deg 6.387 r_mcangle_other 4.313 r_mcangle_it 4.312 r_mcbond_other 4.002 r_mcbond_it 3.996 r_angle_refined_deg 1.689 r_angle_other_deg 0.597 r_nbd_refined 0.233 r_nbd_other 0.192 r_symmetry_nbd_other 0.185 r_symmetry_nbd_refined 0.181 r_nbtor_refined 0.171 r_symmetry_xyhbond_nbd_refined 0.167 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.08 r_chiral_restr_other 0.061 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2407 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing