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Crystal Structure of UFC1 T106S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 1.4M Sodium Malonate dibasic monohydrate pH 6.0.
Crystal Properties Matthews coefficient Solvent content 2.03 39.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.16 α = 90 b = 47.16 β = 90 c = 143.616 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 16M 2022-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.87313 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.115 33.35 98.88 0.02378 1 14.67 2 63633 12.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.115 1.154 92.21 0.3585 0.818 2.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.115 33.35 63633 3175 98.887 0.175 0.174 0.174 0.192 0.192 14.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.114 -0.114 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.69 r_dihedral_angle_4_deg 12.296 r_dihedral_angle_3_deg 10.393 r_dihedral_angle_1_deg 6.359 r_lrange_it 4.429 r_lrange_other 4.246 r_scangle_it 3.523 r_scangle_other 3.517 r_scbond_it 2.549 r_scbond_other 2.501
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.69 r_dihedral_angle_4_deg 12.296 r_dihedral_angle_3_deg 10.393 r_dihedral_angle_1_deg 6.359 r_lrange_it 4.429 r_lrange_other 4.246 r_scangle_it 3.523 r_scangle_other 3.517 r_scbond_it 2.549 r_scbond_other 2.501 r_angle_refined_deg 2.002 r_mcangle_it 1.763 r_mcangle_other 1.762 r_angle_other_deg 1.556 r_mcbond_other 1.304 r_mcbond_it 1.303 r_symmetry_nbd_refined 0.417 r_nbd_other 0.263 r_nbd_refined 0.229 r_symmetry_xyhbond_nbd_refined 0.207 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.178 r_chiral_restr 0.128 r_xyhbond_nbd_refined 0.115 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1337 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 5
Software Software Software Name Purpose autoPROC data processing autoPROC data reduction autoPROC data scaling REFMAC refinement