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Crystal Structure of UFC1 E149I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1M Bis-Tris pH 5.5, 2.0M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.04 39.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.3 α = 90 b = 47.3 β = 90 c = 143.27 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 200K 2022-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 39.47 99.5 0.19 0.973 10.38 3.38 19946 19.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.103 99.8 0.959 0.49 1.75 2.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.03 39.47 11193 564 99.875 0.211 0.2085 0.2166 0.2471 0.2532 14.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.643 -0.643 1.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.543 r_dihedral_angle_4_deg 18.181 r_dihedral_angle_3_deg 15.208 r_dihedral_angle_1_deg 7.181 r_lrange_it 5.264 r_lrange_other 4.744 r_scangle_it 2.298 r_scangle_other 2.297 r_mcangle_it 1.696 r_mcangle_other 1.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.543 r_dihedral_angle_4_deg 18.181 r_dihedral_angle_3_deg 15.208 r_dihedral_angle_1_deg 7.181 r_lrange_it 5.264 r_lrange_other 4.744 r_scangle_it 2.298 r_scangle_other 2.297 r_mcangle_it 1.696 r_mcangle_other 1.696 r_angle_refined_deg 1.571 r_scbond_it 1.535 r_scbond_other 1.534 r_angle_other_deg 1.334 r_mcbond_it 1.063 r_mcbond_other 1.058 r_symmetry_xyhbond_nbd_refined 0.255 r_symmetry_nbd_refined 0.236 r_nbd_other 0.232 r_symmetry_nbd_other 0.206 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.167 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1345 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement Coot model building