☰ Navigation Tabs
Crystal Structure of UFC1 C116E&T106S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Bis-Tris, pH 5.5, 2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.01 38.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.802 α = 90 b = 46.802 β = 90 c = 144.376 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 9M 2024-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 39.27 99.99 0.02536 1 16.9 2 25209 17.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.585 100 0.1641 0.963 4.76 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.53 39.27 25209 1250 99.996 0.178 0.1768 0.1911 0.2077 0.2106 17.152
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.193 0.193 -0.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.441 r_dihedral_angle_3_deg 12.385 r_dihedral_angle_4_deg 11.133 r_dihedral_angle_1_deg 6.257 r_lrange_it 5.226 r_lrange_other 5.183 r_scangle_it 4.241 r_scangle_other 4.213 r_scbond_it 3.03 r_scbond_other 3.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.441 r_dihedral_angle_3_deg 12.385 r_dihedral_angle_4_deg 11.133 r_dihedral_angle_1_deg 6.257 r_lrange_it 5.226 r_lrange_other 5.183 r_scangle_it 4.241 r_scangle_other 4.213 r_scbond_it 3.03 r_scbond_other 3.01 r_mcangle_other 2.219 r_mcangle_it 2.215 r_angle_refined_deg 2.027 r_angle_other_deg 1.541 r_mcbond_it 1.523 r_mcbond_other 1.504 r_symmetry_nbd_refined 0.292 r_nbd_other 0.27 r_nbd_refined 0.224 r_symmetry_xyhbond_nbd_refined 0.208 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.107 r_symmetry_nbtor_other 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1316 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling Coot model building