☰ Navigation Tabs
Crystal Structure of UFC1 C116E&T106I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Bis-Tris, pH 5.5, 2 M ammonium sulfate.
Crystal Properties Matthews coefficient Solvent content 2.01 38.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.837 α = 90 b = 46.837 β = 90 c = 144.089 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 9M 2024-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44.543 99.97 0.04144 0.999 13.74 2 16486 20.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.833 100 0.2425 0.924 3.44 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.77 44.543 16486 853 99.982 0.179 0.1777 0.192 0.1996 0.2042 19.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.042 0.042 -0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.434 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 12.472 r_lrange_it 6.854 r_lrange_other 6.846 r_dihedral_angle_1_deg 6.234 r_scangle_it 4.055 r_scangle_other 4.006 r_scbond_it 2.733 r_scbond_other 2.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.434 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 12.472 r_lrange_it 6.854 r_lrange_other 6.846 r_dihedral_angle_1_deg 6.234 r_scangle_it 4.055 r_scangle_other 4.006 r_scbond_it 2.733 r_scbond_other 2.707 r_mcangle_it 2.444 r_mcangle_other 2.443 r_mcbond_it 1.713 r_mcbond_other 1.684 r_angle_refined_deg 1.647 r_angle_other_deg 1.454 r_symmetry_nbd_refined 0.24 r_nbd_refined 0.211 r_symmetry_nbd_other 0.191 r_nbd_other 0.179 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.132 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.095 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1329 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement Coot model building