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Crystal Structure of UFC1 E149D
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 2% (v/v) Tacsimate Ph 7.0, 0.1M Hepes pH 7.5, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.398 α = 90 b = 46.829 β = 90 c = 80.201 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 200K 2022-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.397 40.47 99.98 0.0388 1 14.18 2 33844 18.535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 100 1.428 0.398 0.63 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.96 38.873 11809 610 94.253 0.198 0.1946 0.1961 0.2573 0.2632 20.328
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.942 -0.368 -0.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.161 r_dihedral_angle_3_deg 15.218 r_dihedral_angle_4_deg 14.95 r_dihedral_angle_1_deg 6.585 r_lrange_it 5.589 r_lrange_other 5.415 r_scangle_other 3.084 r_scangle_it 3.083 r_mcangle_it 2.789 r_mcangle_other 2.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.161 r_dihedral_angle_3_deg 15.218 r_dihedral_angle_4_deg 14.95 r_dihedral_angle_1_deg 6.585 r_lrange_it 5.589 r_lrange_other 5.415 r_scangle_other 3.084 r_scangle_it 3.083 r_mcangle_it 2.789 r_mcangle_other 2.787 r_scbond_it 1.889 r_scbond_other 1.871 r_mcbond_it 1.708 r_mcbond_other 1.707 r_angle_other_deg 1.314 r_angle_refined_deg 1.271 r_nbd_other 0.213 r_symmetry_nbd_other 0.195 r_nbd_refined 0.182 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.14 r_symmetry_xyhbond_nbd_refined 0.13 r_symmetry_nbd_refined 0.095 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.082 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1384 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Coot model building