☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(11,8)-(E)-OH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.43 49.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.835 α = 90 b = 48.835 β = 90 c = 197.83 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 49.46 100 0.058 0.063 0.025 1 19.2 11.8 34210
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.68 100 1.403 1.526 0.599 0.723 1.8 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 42.328 34134 1696 99.968 0.209 0.2072 0.2072 0.2419 0.241 35.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.766 -0.383 -0.766 2.486
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.945 r_dihedral_angle_6_deg 16.746 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 8.151 r_lrange_it 6.253 r_lrange_other 6.179 r_scangle_it 3.679 r_scangle_other 3.677 r_mcangle_other 2.903 r_mcangle_it 2.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.945 r_dihedral_angle_6_deg 16.746 r_dihedral_angle_3_deg 12.933 r_dihedral_angle_1_deg 8.151 r_lrange_it 6.253 r_lrange_other 6.179 r_scangle_it 3.679 r_scangle_other 3.677 r_mcangle_other 2.903 r_mcangle_it 2.9 r_scbond_it 2.622 r_scbond_other 2.621 r_angle_refined_deg 2.316 r_mcbond_it 2.176 r_mcbond_other 2.165 r_dihedral_angle_other_2_deg 1.045 r_angle_other_deg 0.759 r_nbd_other 0.219 r_nbd_refined 0.207 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.187 r_symmetry_nbd_refined 0.187 r_xyhbond_nbd_refined 0.184 r_symmetry_xyhbond_nbd_refined 0.18 r_chiral_restr 0.111 r_ncsr_local_group_1 0.104 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1868 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing