☰ Navigation Tabs
Crystal Structure of UFC1 K108M
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.15M Ammonium sulfate, 0.1M Sodium Hepes pH 7.0, 20%w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.02 39.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.21 α = 90 b = 47.21 β = 90 c = 143 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2023-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.051 19.706 99.47 0.101 0.996 9.68 2 10757 20.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.051 2.125 96.52 0.659 0.648 1.38 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.051 19.706 10757 530 99.473 0.218 0.2161 0.2238 0.2533 0.2643 20.842
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.411 -0.411 0.821
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.116 r_dihedral_angle_4_deg 22.062 r_dihedral_angle_3_deg 16.741 r_dihedral_angle_1_deg 6.01 r_lrange_it 5.379 r_lrange_other 5.376 r_scangle_it 2.911 r_scangle_other 2.91 r_mcangle_it 2.157 r_mcangle_other 2.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.116 r_dihedral_angle_4_deg 22.062 r_dihedral_angle_3_deg 16.741 r_dihedral_angle_1_deg 6.01 r_lrange_it 5.379 r_lrange_other 5.376 r_scangle_it 2.911 r_scangle_other 2.91 r_mcangle_it 2.157 r_mcangle_other 2.157 r_scbond_it 1.855 r_scbond_other 1.855 r_mcbond_it 1.401 r_mcbond_other 1.387 r_angle_other_deg 1.365 r_angle_refined_deg 1.331 r_symmetry_nbd_refined 0.325 r_symmetry_xyhbond_nbd_refined 0.312 r_nbd_other 0.249 r_symmetry_nbd_other 0.213 r_nbd_refined 0.201 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.143 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.076 r_xyhbond_nbd_other 0.018 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1347 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Coot model building