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Crystal Structure of UFC1 W145H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.2M Lithium sulfate monohydrate, 0.1M HEPES pH 7.5, 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.94 36.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.548 α = 90 b = 46.512 β = 97.742 c = 45.588 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.022 32.405 98.8 0.414 0.925 2.6 3.5 9919 15.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.022 5.479 100 1.223 0.754 0.378 1.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.022 32.405 9884 487 98.476 0.238 0.2362 0.2414 0.2672 0.272 17.466
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.592 -0.245 -0.897 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.344 r_dihedral_angle_4_deg 22.045 r_dihedral_angle_3_deg 16.202 r_dihedral_angle_1_deg 6.562 r_lrange_it 4.27 r_lrange_other 4.171 r_mcangle_it 1.461 r_mcangle_other 1.46 r_angle_refined_deg 1.439 r_angle_other_deg 1.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.344 r_dihedral_angle_4_deg 22.045 r_dihedral_angle_3_deg 16.202 r_dihedral_angle_1_deg 6.562 r_lrange_it 4.27 r_lrange_other 4.171 r_mcangle_it 1.461 r_mcangle_other 1.46 r_angle_refined_deg 1.439 r_angle_other_deg 1.282 r_scangle_other 1.261 r_scangle_it 1.26 r_mcbond_it 0.877 r_mcbond_other 0.875 r_scbond_it 0.763 r_scbond_other 0.762 r_symmetry_nbd_refined 0.42 r_nbd_other 0.322 r_symmetry_nbd_other 0.213 r_nbd_refined 0.196 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.152 r_symmetry_xyhbond_nbd_refined 0.148 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1269 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement autoPROC data processing autoPROC data scaling Coot model building