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Cryo-EM Structure of the 12-Mer ATPase Complex YsaN from the Type III Secretion System of Yersinia enterocolitica
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s)
Type
Source
Accession Code
Details
in silico model
AlphaFold
AF-A1JQ97-F1
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
3.841
f_angle_d
0.576
f_chiral_restr
0.042
f_plane_restr
0.003
f_bond_d
0.002
Sample
Cryo-EM Structure of the 12-Mer ATPase Complex YsaN from the Type III Secretion System of Yersinia enterocolitica
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
174701
Reported Resolution (Å)
3.51
Resolution Method
FSC 0.143 CUT-OFF
Other Details
The composite map was generated using a consensus map and a focus map in ChimeraX using volume maximum command. The reported resolution corresponding ...
The composite map was generated using a consensus map and a focus map in ChimeraX using volume maximum command. The reported resolution corresponding to the gold-standard FSC (0.143) of the consensus 11-mer reconstruction, which constitutes majority of the map.