GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1MF0 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1MF0_GDP_A_1452 | 79% | 53% | 0.13 | 0.976 | 0.92 | 0.91 | 2 | 2 | 1 | 0 | 100% | 1 |
2DGN_GDP_A_1452 | 86% | 54% | 0.111 | 0.981 | 0.94 | 0.86 | 2 | 2 | 0 | 0 | 100% | 1 |
1LNY_GDP_B_1454 | 82% | 53% | 0.107 | 0.961 | 1.01 | 0.8 | 2 | 2 | 3 | 0 | 100% | 1 |
1LON_GDP_A_1453 | 77% | 55% | 0.126 | 0.966 | 0.92 | 0.81 | 2 | 1 | 1 | 0 | 100% | 1 |
1MEZ_GDP_A_1452 | 70% | 53% | 0.147 | 0.966 | 1.02 | 0.82 | 2 | 1 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
4PZZ_GDP_A_201 | 100% | 54% | 0.035 | 0.989 | 0.92 | 0.86 | 1 | 1 | 0 | 0 | 100% | 1 |