UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2FYC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2FYC_UDP_B_405 | 21% | 32% | 0.189 | 0.8 | 1.21 | 1.47 | 2 | 8 | 0 | 0 | 100% | 1 |
2FYC_UDP_D_529 | 6% | 28% | 0.226 | 0.664 | 1.35 | 1.53 | 2 | 6 | 1 | 0 | 100% | 1 |
1NKH_UDP_D_810 | 99% | 21% | 0.044 | 0.978 | 1.83 | 1.47 | 4 | 7 | 3 | 0 | 100% | 1 |
2FYD_UDP_D_528 | 83% | 20% | 0.102 | 0.962 | 1.55 | 1.79 | 4 | 11 | 2 | 0 | 100% | 1 |
1PZY_UDP_B_407 | 46% | 37% | 0.162 | 0.897 | 1.33 | 1.15 | 3 | 2 | 1 | 0 | 100% | 0.952 |
1NHE_UDP_D_810 | 32% | 14% | 0.147 | 0.821 | 2.52 | 1.41 | 4 | 8 | 5 | 0 | 100% | 1 |
1O23_UDP_B_811 | 8% | 31% | 0.262 | 0.74 | 1.26 | 1.47 | 2 | 7 | 1 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |