Ligand validation:2HDK

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2HDK designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2HDK_PLP_B_401	81%	24%	0.132	0.986	1.45	1.63	3	3	0	0	100%	0.9375
2HDK_PLP_A_400	76%	23%	0.15	0.986	1.42	1.73	2	5	0	0	100%	0.9375
5MPR_PLP_A_401	96%	7%	0.079	0.99	2.66	2.23	4	9	1	0	100%	0.9375
1EKF_PLP_B_370	96%	20%	0.076	0.984	1.57	1.79	2	6	1	0	100%	0.9375
5I5S_PLP_A_401	94%	7%	0.075	0.976	3.25	1.61	3	4	3	0	100%	0.9375
1EKV_PLP_A_370	93%	20%	0.077	0.982	1.92	1.45	4	4	1	0	94%	0.9375
5I5Y_PLP_B_401	92%	9%	0.089	0.98	2.78	1.7	3	6	1	0	100%	0.9375
2BIE_PLP_B_1361	100%	28%	0.039	0.989	1.48	1.39	4	3	1	0	100%	0.9375
9J0V_PLP_A_301	100%	36%	0.037	0.987	0.82	1.68	-	5	0	0	100%	0.9375
4NOG_PLP_A_501	100%	38%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	21%	0.045	0.993	1.96	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	15%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.