GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2QF2 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2QF2_GDP_A_702 | 90% | 49% | 0.082 | 0.966 | 0.9 | 1.06 | - | 3 | 0 | 0 | 100% | 0.7 |
2QF2_GDP_A_703 | 86% | 45% | 0.097 | 0.967 | 0.96 | 1.17 | 1 | 4 | 3 | 0 | 100% | 0.3 |
2QF2_GDP_B_802 | 81% | 47% | 0.096 | 0.949 | 0.84 | 1.18 | - | 4 | 0 | 0 | 100% | 1 |
3DTB_GDP_A_800 | 98% | 50% | 0.058 | 0.984 | 0.85 | 1.06 | 1 | 2 | 0 | 0 | 100% | 0.8 |
5FH5_GDP_A_703 | 90% | 45% | 0.088 | 0.972 | 0.9 | 1.22 | 1 | 2 | 0 | 0 | 100% | 0.7 |
3MOH_GDP_A_1000 | 88% | 25% | 0.09 | 0.967 | 1.2 | 1.84 | 1 | 8 | 0 | 0 | 100% | 1 |
7L3M_GDP_A_704 | 84% | 38% | 0.099 | 0.96 | 0.79 | 1.62 | - | 8 | 0 | 0 | 100% | 1 |
7L3V_GDP_A_902 | 70% | 41% | 0.142 | 0.961 | 0.86 | 1.42 | 1 | 6 | 1 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |