GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 2RJ7 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2RJ7_GDU_A_475 | 62% | 9% | 0.127 | 0.919 | 2.06 | 2.43 | 6 | 13 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
5C1H_GDU_A_402 | 66% | 42% | 0.126 | 0.93 | 0.94 | 1.32 | 2 | 7 | 1 | 0 | 100% | 1 |
5C1L_GDU_A_403 | 65% | 35% | 0.115 | 0.917 | 0.91 | 1.63 | 1 | 9 | 0 | 0 | 100% | 1 |
5C1G_GDU_A_403 | 58% | 35% | 0.131 | 0.908 | 0.96 | 1.57 | 3 | 8 | 0 | 0 | 100% | 0.9083 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 11% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |
2FYC_GDU_D_528 | 86% | 27% | 0.102 | 0.971 | 1.41 | 1.53 | 4 | 7 | 0 | 0 | 100% | 1 |