GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 2VS5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 2VS5_GDU_A_1368 | 91% | 5% | 0.066 | 0.958 | 2.76 | 2.47 | 12 | 14 | 0 | 0 | 100% | 1 |
| 2VS5_GDU_B_1361 | 91% | 5% | 0.067 | 0.959 | 2.79 | 2.52 | 12 | 14 | 0 | 0 | 100% | 1 |
| 5NRD_GDU_A_403 | 41% | 68% | 0.144 | 0.86 | 0.35 | 0.7 | - | 2 | 6 | 0 | 100% | 0.74 |
| 5NRB_GDU_B_402 | 15% | 89% | 0.233 | 0.802 | 0.27 | 0.3 | - | - | 1 | 0 | 100% | 0.59 |
| 4LW3_GDU_A_402 | 100% | 11% | 0.023 | 0.996 | 2.61 | 1.49 | 16 | 9 | 0 | 0 | 100% | 1 |
| 3UKP_GDU_D_602 | 100% | 13% | 0.031 | 0.993 | 2.02 | 1.84 | 10 | 13 | 5 | 0 | 100% | 1 |
| 3UKF_GDU_H_802 | 99% | 13% | 0.042 | 0.993 | 1.94 | 1.89 | 12 | 10 | 3 | 0 | 100% | 1 |
| 6GX0_GDU_A_402 | 99% | 36% | 0.038 | 0.987 | 1.15 | 1.25 | 3 | 9 | 0 | 0 | 100% | 0.5 |
| 5M7D_GDU_A_402 | 99% | 40% | 0.044 | 0.984 | 1.11 | 1.11 | 3 | 5 | 0 | 0 | 100% | 1 |