CVM: CYMAL-4
CVM is a Ligand Of Interest in 2XQS designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2XQS_CVM_E_106 | 37% | 90% | 0.114 | 0.962 | 0.37 | 0.17 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_A_107 | 36% | 86% | 0.131 | 0.975 | 0.38 | 0.28 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_106 | 36% | 90% | 0.128 | 0.97 | 0.34 | 0.19 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_103 | 34% | 80% | 0.134 | 0.967 | 0.33 | 0.44 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_D_107 | 32% | 87% | 0.138 | 0.961 | 0.37 | 0.27 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_106 | 29% | 90% | 0.151 | 0.963 | 0.35 | 0.18 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_110 | 28% | 89% | 0.149 | 0.956 | 0.34 | 0.25 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_A_106 | 27% | 90% | 0.154 | 0.954 | 0.32 | 0.21 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_104 | 27% | 90% | 0.165 | 0.965 | 0.3 | 0.25 | - | - | 3 | 0 | 18% | 1 |
| 2XQS_CVM_D_104 | 23% | 89% | 0.168 | 0.946 | 0.33 | 0.26 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_110 | 21% | 89% | 0.181 | 0.944 | 0.32 | 0.26 | - | - | 2 | 0 | 18% | 1 |
| 2XQS_CVM_A_110 | 20% | 82% | 0.186 | 0.945 | 0.32 | 0.41 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_104 | 20% | 82% | 0.176 | 0.932 | 0.32 | 0.42 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_D_103 | 19% | 80% | 0.189 | 0.944 | 0.33 | 0.45 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_A_103 | 19% | 86% | 0.201 | 0.957 | 0.3 | 0.36 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_107 | 19% | 86% | 0.183 | 0.934 | 0.41 | 0.25 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_E_103 | 18% | 84% | 0.202 | 0.95 | 0.31 | 0.39 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_B_109 | 18% | 84% | 0.192 | 0.939 | 0.31 | 0.39 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_D_106 | 18% | 86% | 0.2 | 0.947 | 0.29 | 0.37 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_A_109 | 18% | 86% | 0.199 | 0.941 | 0.36 | 0.29 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_102 | 17% | 59% | 0.216 | 0.805 | 0.59 | 0.81 | 1 | 2 | 0 | 0 | 100% | 0.64 |
| 2XQS_CVM_A_108 | 17% | 85% | 0.206 | 0.945 | 0.31 | 0.36 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_A_104 | 16% | 89% | 0.201 | 0.932 | 0.36 | 0.23 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_108 | 16% | 86% | 0.219 | 0.948 | 0.3 | 0.35 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_C_109 | 16% | 84% | 0.202 | 0.929 | 0.34 | 0.36 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_E_107 | 16% | 87% | 0.225 | 0.954 | 0.33 | 0.29 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_E_104 | 16% | 88% | 0.228 | 0.956 | 0.35 | 0.27 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_D_102 | 15% | 49% | 0.228 | 0.802 | 0.61 | 1.25 | 1 | 5 | 0 | 0 | 100% | 0.64 |
| 2XQS_CVM_B_102 | 15% | 55% | 0.235 | 0.806 | 0.56 | 1 | 1 | 3 | 0 | 0 | 100% | 0.64 |
| 2XQS_CVM_D_110 | 15% | 86% | 0.216 | 0.935 | 0.37 | 0.29 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_107 | 15% | 90% | 0.229 | 0.948 | 0.35 | 0.18 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_E_109 | 13% | 83% | 0.196 | 0.9 | 0.38 | 0.34 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_D_108 | 13% | 91% | 0.224 | 0.927 | 0.32 | 0.18 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_E_102 | 13% | 57% | 0.233 | 0.783 | 0.57 | 0.91 | 1 | 2 | 4 | 0 | 100% | 0.64 |
| 2XQS_CVM_E_108 | 12% | 91% | 0.242 | 0.939 | 0.37 | 0.15 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_B_103 | 12% | 86% | 0.232 | 0.928 | 0.3 | 0.36 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_C_108 | 11% | 90% | 0.214 | 0.897 | 0.34 | 0.2 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_D_109 | 8% | 80% | 0.245 | 0.89 | 0.36 | 0.42 | - | - | 1 | 0 | 18% | 1 |
| 2XQS_CVM_E_110 | 8% | 87% | 0.295 | 0.942 | 0.34 | 0.28 | - | - | 0 | 0 | 18% | 1 |
| 2XQS_CVM_A_102 | 6% | 45% | 0.282 | 0.726 | 0.65 | 1.35 | 1 | 6 | 0 | 0 | 100% | 0.64 |
| 2XQT_CVM_A_1085 | 36% | 87% | 0.115 | 0.956 | 0.27 | 0.36 | - | - | 1 | 0 | 18% | 1 |
| 2XQU_CVM_E_103 | 30% | 70% | 0.113 | 0.919 | 0.23 | 0.75 | - | - | 0 | 0 | 21% | 1 |
| 2WIE_CVM_D_106 | 25% | 90% | 0.138 | 0.926 | 0.32 | 0.22 | - | - | 0 | 0 | 18% | 1 |
| 4IUP_CVM_A_303 | 30% | 46% | 0.137 | 0.863 | 0.98 | 0.99 | 1 | 2 | 1 | 0 | 67% | 1 |
| 4IUQ_CVM_B_302 | 30% | 16% | 0.154 | 0.819 | 1.24 | 2.33 | 5 | 20 | 21 | 0 | 100% | 1 |
| 4IUT_CVM_A_302 | 30% | 38% | 0.166 | 0.893 | 0.53 | 1.75 | - | 6 | 3 | 0 | 67% | 1 |














