GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 2FYC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2FYC_GDU_D_528 | 86% | 27% | 0.102 | 0.971 | 1.41 | 1.53 | 4 | 7 | 0 | 0 | 100% | 1 |
2FYC_GDU_B_403 | 68% | 30% | 0.147 | 0.959 | 1.26 | 1.54 | 4 | 9 | 0 | 0 | 100% | 1 |
1YRO_GDU_D_528 | 85% | 20% | 0.099 | 0.965 | 1.6 | 1.77 | 5 | 8 | 4 | 0 | 100% | 1 |
1TW1_GDU_B_404 | 85% | 25% | 0.106 | 0.972 | 1.16 | 1.87 | 4 | 13 | 2 | 1 | 100% | 1 |
1TVY_GDU_A_404 | 85% | 33% | 0.103 | 0.967 | 1.16 | 1.48 | 5 | 5 | 2 | 0 | 100% | 1 |
1O0R_GDU_B_806 | 79% | 8% | 0.126 | 0.972 | 2.15 | 2.48 | 9 | 11 | 0 | 0 | 100% | 1 |
1FR8_GDU_B_403 | 37% | 6% | 0.161 | 0.914 | 2.17 | 2.98 | 5 | 11 | 3 | 0 | 69% | 0.6944 |
4HO9_GDU_B_300 | 99% | 24% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 47% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 97% | 44% | 0.071 | 0.983 | 0.91 | 1.26 | 1 | 6 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 78% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 11% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |