JHZ: (2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
JHZ is a Ligand Of Interest in 3NDJ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3NDJ_JHZ_A_418 | 96% | 11% | 0.073 | 0.981 | 1.8 | 2.43 | 5 | 14 | 1 | 0 | 100% | 1 |
| 4E2Z_JHZ_A_504 | 97% | 20% | 0.064 | 0.981 | 1.16 | 2.18 | 3 | 14 | 0 | 0 | 100% | 1 |
| 4E31_JHZ_A_505 | 95% | 25% | 0.08 | 0.984 | 1.15 | 1.91 | 3 | 15 | 1 | 0 | 100% | 1 |
| 4E2W_JHZ_A_506 | 94% | 20% | 0.076 | 0.974 | 1.18 | 2.21 | 3 | 14 | 1 | 0 | 100% | 1 |
| 4E2Y_JHZ_A_503 | 86% | 20% | 0.104 | 0.973 | 1.14 | 2.2 | 2 | 10 | 2 | 0 | 100% | 1 |
| 5T67_JHZ_A_503 | 95% | 5% | 0.081 | 0.986 | 1.91 | 3.49 | 7 | 14 | 0 | 0 | 100% | 1 |
