UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 3S27 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3S27_UDP_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3S27_UDP_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3S27_UDP_A_901Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3S27_UDP_A_901 100% 30% 0.042 0.991.04 1.71 - 600100%1
3S27_UDP_E_901 100% 34% 0.043 0.9871.03 1.56 1 640100%1
3S27_UDP_D_901 100% 29% 0.044 0.9861.03 1.81 - 620100%1
3S27_UDP_G_901 99% 35% 0.047 0.9860.97 1.56 - 610100%1
3S27_UDP_F_901 99% 29% 0.048 0.9841 1.81 1 810100%1
3S27_UDP_C_901 98% 32% 0.052 0.9771.06 1.63 1 710100%1
3S27_UDP_B_901 98% 29% 0.057 0.9781.02 1.82 1 700100%1
3S27_UDP_H_901 98% 30% 0.058 0.9781.02 1.75 - 600100%1
3S28_UDP_B_901 79% 29% 0.141 0.9890.97 1.85 - 810100%0.98
3S29_UDP_A_901 74% 35% 0.162 0.9930.95 1.59 - 610100%1
8X3Q_UDP_C_401 100% 3% 0.015 0.9983.32 2.69 13 1300100%1
8X3U_UDP_B_401 100% 3% 0.012 0.9993.31 2.68 13 1320100%1
8VH8_UDP_C_704 100% 62% 0.032 0.9950.55 0.9 - 100100%1
2B69_UDP_A_900 100% 42% 0.032 0.9921.03 1.21 2 400100%1
4GYW_UDP_C_1101 100% 37% 0.037 0.9881.03 1.45 2 400100%1