3TDK
UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE
UPG is a Ligand Of Interest in 3TDK designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
3TDK_UPG_B_501 | 62% | 6% | 0.181 | 0.975 | 2.59 | 2.37 | 7 | 16 | 5 | 0 | 100% | 1 |
3TDK_UPG_H_501 | 59% | 7% | 0.191 | 0.976 | 2.55 | 2.24 | 7 | 14 | 7 | 0 | 100% | 1 |
3TDK_UPG_D_501 | 58% | 29% | 0.194 | 0.975 | 0.97 | 1.85 | 2 | 11 | 3 | 0 | 100% | 1 |
3TDK_UPG_L_501 | 58% | 31% | 0.179 | 0.958 | 1 | 1.74 | 2 | 10 | 3 | 0 | 100% | 1 |
3TDK_UPG_C_501 | 58% | 9% | 0.193 | 0.972 | 2.55 | 2.01 | 7 | 13 | 6 | 0 | 100% | 1 |
3TDK_UPG_E_501 | 57% | 28% | 0.192 | 0.967 | 1.06 | 1.83 | 5 | 9 | 5 | 0 | 100% | 1 |
3TDK_UPG_K_501 | 56% | 4% | 0.175 | 0.949 | 3.21 | 2.41 | 10 | 11 | 11 | 0 | 100% | 1 |
3TDK_UPG_J_501 | 56% | 23% | 0.2 | 0.974 | 1.33 | 1.83 | 3 | 12 | 2 | 0 | 100% | 1 |
3TDK_UPG_G_501 | 56% | 6% | 0.195 | 0.968 | 2.52 | 2.55 | 8 | 16 | 6 | 0 | 100% | 1 |
3TDK_UPG_A_501 | 52% | 6% | 0.21 | 0.969 | 2.55 | 2.47 | 9 | 13 | 8 | 0 | 100% | 1 |
3TDK_UPG_I_501 | 52% | 8% | 0.202 | 0.96 | 2.61 | 2.09 | 8 | 15 | 3 | 0 | 100% | 1 |
3TDK_UPG_F_501 | 46% | 27% | 0.212 | 0.947 | 1.03 | 1.88 | 1 | 12 | 4 | 0 | 100% | 1 |
2Q3E_UPG_C_501 | 99% | 41% | 0.057 | 0.987 | 0.93 | 1.37 | - | 6 | 2 | 0 | 100% | 1 |
3KHU_UPG_E_502 | 86% | 33% | 0.096 | 0.964 | 1.15 | 1.5 | 4 | 9 | 0 | 0 | 100% | 1 |
4EDF_UPG_B_501 | 85% | 41% | 0.101 | 0.968 | 0.9 | 1.37 | 2 | 5 | 0 | 0 | 100% | 1 |
6C5A_UPG_F_502 | 79% | 34% | 0.133 | 0.98 | 1.19 | 1.4 | 3 | 6 | 2 | 0 | 100% | 1 |
6C4J_UPG_A_502 | 77% | 34% | 0.142 | 0.981 | 1.22 | 1.37 | 2 | 5 | 1 | 0 | 100% | 1 |
3JSZ_UPG_A_526 | 98% | 39% | 0.057 | 0.982 | 0.94 | 1.41 | 1 | 5 | 0 | 0 | 100% | 1 |
6K0I_UPG_A_402 | 98% | 27% | 0.057 | 0.98 | 1.31 | 1.63 | 5 | 11 | 2 | 0 | 100% | 1 |
1EK6_UPG_A_401 | 98% | 48% | 0.061 | 0.982 | 0.89 | 1.12 | - | 3 | 1 | 0 | 100% | 1 |
1I24_UPG_A_402 | 98% | 49% | 0.061 | 0.982 | 0.87 | 1.11 | 1 | 4 | 1 | 0 | 100% | 0.9833 |
7VZ6_UPG_A_501 | 97% | 67% | 0.071 | 0.987 | 0.52 | 0.73 | - | - | 0 | 0 | 100% | 1 |