UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3UKK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3UKK_UDP_A_602 | 72% | 29% | 0.099 | 0.925 | 1.02 | 1.68 | - | 8 | 2 | 0 | 100% | 1 |
| 3UKK_UDP_B_602 | 67% | 32% | 0.1 | 0.908 | 0.99 | 1.58 | 1 | 7 | 2 | 0 | 100% | 1 |
| 3UKK_UDP_D_602 | 56% | 34% | 0.111 | 0.882 | 0.97 | 1.51 | 1 | 6 | 3 | 0 | 100% | 1 |
| 3UKK_UDP_C_602 | 41% | 34% | 0.122 | 0.836 | 0.97 | 1.54 | - | 6 | 4 | 0 | 100% | 1 |
| 3UTG_UDP_A_515 | 100% | 15% | 0.027 | 0.996 | 1.84 | 1.81 | 8 | 8 | 0 | 0 | 100% | 0.9 |
| 4U8N_UDP_B_602 | 97% | 16% | 0.058 | 0.981 | 1.85 | 1.72 | 8 | 11 | 0 | 0 | 100% | 1 |
| 3UKL_UDP_B_800 | 89% | 34% | 0.066 | 0.95 | 1 | 1.5 | 1 | 5 | 2 | 0 | 100% | 1 |
| 4U8O_UDP_B_602 | 81% | 13% | 0.096 | 0.952 | 2.05 | 1.79 | 9 | 10 | 2 | 0 | 100% | 0.91 |
| 5HHF_UDP_A_604 | 75% | 4% | 0.104 | 0.94 | 3.98 | 1.63 | 16 | 9 | 4 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
