PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 3VBE designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3VBE_PLP_A_500 | 99% | 29% | 0.048 | 0.985 | 1.28 | 1.54 | 2 | 4 | 0 | 0 | 100% | 1 |
3VBE_PLP_B_501 | 96% | 2% | 0.064 | 0.975 | 0.96 | 5.99 | 1 | 5 | 1 | 0 | 100% | 1 |
3VBE_PLP_D_401 | 94% | 1% | 0.068 | 0.969 | 1.04 | 7.73 | 1 | 3 | 2 | 0 | 100% | 1 |
3VBE_PLP_C_401 | 94% | 1% | 0.075 | 0.973 | 2.85 | 5.4 | 2 | 3 | 4 | 0 | 100% | 1 |
3CEJ_PLP_A_832 | 100% | 41% | 0.021 | 0.998 | 1.23 | 1.05 | 1 | 2 | 8 | 0 | 100% | 1 |
3CEM_PLP_A_832 | 100% | 41% | 0.021 | 0.997 | 1.24 | 1.04 | 2 | 2 | 1 | 0 | 100% | 1 |
4PPM_PLP_A_902 | 100% | 7% | 0.019 | 0.998 | 2.88 | 1.91 | 9 | 6 | 0 | 0 | 100% | 1 |
1EKV_PLP_A_370 | 100% | 19% | 0.019 | 0.998 | 2 | 1.45 | 5 | 4 | 1 | 0 | 94% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.026 | 0.996 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 1 |