TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3VBN designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3VBN_TYD_A_301 | 49% | 22% | 0.106 | 0.888 | 1.35 | 1.85 | 3 | 8 | 0 | 0 | 100% | 1 |
| 3VBN_TYD_E_301 | 44% | 18% | 0.113 | 0.875 | 1.36 | 2.1 | 3 | 12 | 1 | 0 | 100% | 1 |
| 3VBN_TYD_C_301 | 41% | 17% | 0.123 | 0.879 | 1.41 | 2.11 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3VBM_TYD_A_301 | 82% | 16% | 0.06 | 0.962 | 1.31 | 2.28 | 3 | 8 | 0 | 0 | 100% | 1 |
| 3VBJ_TYD_E_301 | 55% | 25% | 0.099 | 0.906 | 1.31 | 1.73 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3VBP_TYD_E_301 | 54% | 22% | 0.099 | 0.899 | 1.33 | 1.88 | 3 | 10 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 97% | 24% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 97% | 22% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 96% | 21% | 0.037 | 0.987 | 1.33 | 1.94 | 3 | 6 | 0 | 0 | 100% | 1 |
| 1LVW_TYD_A_3002 | 95% | 30% | 0.041 | 0.984 | 1.78 | 1.05 | 4 | 2 | 0 | 0 | 100% | 1 |
| 3RYK_TYD_B_182 | 95% | 11% | 0.042 | 0.985 | 2.35 | 1.83 | 4 | 8 | 0 | 0 | 100% | 0.7 |
