XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 3UG5 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3UG5_XYP_B_487 | 90% | 60% | 0.07 | 0.957 | 1.04 | 0.39 | 1 | - | 0 | 0 | 100% | 1 |
| 3UG5_XYP_A_487 | 88% | 35% | 0.07 | 0.952 | 1.21 | 1.26 | - | 2 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_E_487 | 86% | 22% | 0.072 | 0.945 | 1.72 | 1.43 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_D_487 | 82% | 22% | 0.081 | 0.941 | 2.1 | 1.11 | 4 | 2 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_F_487 | 78% | 24% | 0.09 | 0.937 | 1.79 | 1.26 | 2 | 1 | 1 | 0 | 100% | 1 |
| 3UG5_XYP_C_487 | 71% | 33% | 0.099 | 0.922 | 1.37 | 1.18 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_D_490 | 66% | 18% | 0.106 | 0.912 | 1.86 | 1.56 | 4 | 3 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_D_489 | 60% | 15% | 0.116 | 0.9 | 2.07 | 1.6 | 4 | 3 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_A_489 | 38% | 7% | 0.156 | 0.859 | 2.71 | 2.09 | 4 | 4 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_B_489 | 37% | 17% | 0.149 | 0.847 | 2.46 | 1.13 | 5 | 1 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_B_488 | 34% | 5% | 0.148 | 0.831 | 2.32 | 2.98 | 3 | 8 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_D_488 | 33% | 16% | 0.15 | 0.831 | 2.37 | 1.3 | 3 | 1 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_C_488 | 25% | 11% | 0.177 | 0.818 | 2.33 | 1.77 | 3 | 3 | 0 | 0 | 100% | 1 |
| 3UG5_XYP_A_488 | 18% | 2% | 0.167 | 0.759 | 4.12 | 2.77 | 5 | 4 | 1 | 0 | 100% | 1 |
| 3UG5_XYP_E_488 | 8% | 8% | 0.216 | 0.707 | 2.41 | 2.22 | 4 | 5 | 0 | 0 | 100% | 1 |
| 4PMY_XYP_A_401 | 100% | 73% | 0.017 | 0.996 | 0.47 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 1OD8_XYP_A_1311 | 100% | 64% | 0.027 | 0.992 | 0.69 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 3FYU_XYP_C_1001 | 100% | 48% | 0.033 | 0.993 | 1.11 | 0.8 | - | - | 0 | 0 | 100% | 1 |
| 5L6G_XYP_A_510 | 100% | 65% | 0.033 | 0.988 | 0.42 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYP_B_1148 | 100% | 20% | 0.022 | 0.994 | 1.19 | 2.06 | 1 | 5 | 6 | 0 | 90% | 1 |














