GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 4C7O designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4C7O_GDP_B_1003Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4C7O_GDP_B_1003Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4C7O_GDP_B_1003Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4C7O_GDP_B_1003 73% 42% 0.162 0.9890.95 1.31 1 420100%1
4C7O_GDP_C_1003 73% 32% 0.167 0.9940.94 1.72 1 900100%1
4C7O_GDP_A_1003 72% 39% 0.167 0.9930.92 1.44 1 500100%1
4C7O_GDP_D_1003 68% 43% 0.179 0.9931 1.22 2 300100%1
4C7O_GDP_D_1306 68% 41% 0.139 0.9511.03 1.25 2 400100%1
6FQD_GDP_A_502 81% 5% 0.116 0.9683.9 1.62 12 720100%1
6NC4_GDP_B_501 50% 9% 0.146 0.8971.92 2.52 7 1200100%1
6NC1_GDP_A_501 9% 17% 0.264 0.7471.89 1.73 4 810100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1