DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)

DGD is a Ligand Of Interest in 4RVY designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4RVY_DGD_c_517Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4RVY_DGD_c_517Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4RVY_DGD_c_517Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4RVY_DGD_c_517 8% 55% 0.4 0.8930.88 0.86 2 20094%1
4RVY_DGD_c_516 2% 52% 0.546 0.870.88 0.97 3 20094%1
4RVY_DGD_C_517 2% 55% 0.534 0.8260.88 0.86 2 20094%1
4RVY_DGD_c_518 2% 56% 0.531 0.8070.79 0.9 3 30094%1
4RVY_DGD_C_516 2% 52% 0.582 0.850.87 0.98 2 20094%1
4RVY_DGD_C_518 1% 56% 0.637 0.7530.79 0.9 3 30094%1
4RVY_DGD_h_102 0% 52% 0.903 0.8160.92 0.94 3 40094%1
4RVY_DGD_H_102 0% 52% 1 0.8540.92 0.94 3 40094%1
4RVY_DGD_d_410 0% 48% 0.762 0.531 0.99 1.02 4 60094%1
4RVY_DGD_D_410 0% 48% 1.244 0.48 0.99 1.03 4 60094%1
5GTI_DGD_h_103 96% 52% 0.05 0.9670.89 0.96 3 30094%1
5V2C_DGD_C_516 95% 43% 0.067 0.9830.89 1.29 5 100094%1
5WS6_DGD_h_103 92% 53% 0.065 0.9680.86 0.96 3 30094%1
7YQ7_DGD_C_518 87% 51% 0.084 0.9670.83 1.07 3 50094%1
5B5E_DGD_c_919 87% 44% 0.076 0.9570.94 1.23 3 100094%1
7M78_DGD_L_207 91% 40% 0.082 0.970.93 1.4 2 1440100%1